GO faster ChEBI with Reasonable Biochemistry | Zendy

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GO faster ChEBI with Reasonable Biochemistry

Author(s) -

Duncan Hull

Publication year - 2008

Publication title -

nature precedings

Language(s) - English

Resource type - Journals

ISSN - 1756-0357

DOI - 10.1038/npre.2008.2435.1

Subject(s) - ontology , computer science , gene ontology , computational biology , information retrieval , data science , chemistry , gene , biology , biochemistry , philosophy , gene expression , epistemology

Chemical Entities of Biological Interest (ChEBI) [1] is a database and ontology that represents knowledge about more than 15,000 small molecules and their biochemistry. The database does not currently use description logic reasoning or OWL, but is investigating this possibility for better, cheaper and faster ontology development in the future. This poster describes four specific problems and solutions to reasoning in ChEBI: 1. Using necessary and sufficient conditions 2. identifying inconsistencies 3. Improving alignment with the the Gene Ontology (GO) 4. Reasoning with chemical structures

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