Strand separation establishes a sustained lock at the Tus–Ter replication fork barrier
Author(s) -
Bojk A. Berghuis,
David Dulin,
ZhiQiang Xu,
Theo van Laar,
Bronwen Cross,
Richard Janissen,
Slobodan Jergic,
Nicholas E. Dixon,
Martin Depken,
Nynke H. Dekker
Publication year - 2015
Publication title -
nature chemical biology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 6.412
H-Index - 216
eISSN - 1552-4469
pISSN - 1552-4450
DOI - 10.1038/nchembio.1857
Subject(s) - replisome , lock (firearm) , microbiology and biotechnology , biology , dna replication , dna , ter protein , biophysics , genetics , computational biology , origin of replication , circular bacterial chromosome , mechanical engineering , engineering
The bidirectional replication of a circular chromosome by many bacteria necessitates proper termination to avoid the head-on collision of the opposing replisomes. In Escherichia coli, replisome progression beyond the termination site is prevented by Tus proteins bound to asymmetric Ter sites. Structural evidence indicates that strand separation on the blocking (nonpermissive) side of Tus-Ter triggers roadblock formation, but biochemical evidence also suggests roles for protein-protein interactions. Here DNA unzipping experiments demonstrate that nonpermissively oriented Tus-Ter forms a tight lock in the absence of replicative proteins, whereas permissively oriented Tus-Ter allows nearly unhindered strand separation. Quantifying the lock strength reveals the existence of several intermediate lock states that are impacted by mutations in the lock domain but not by mutations in the DNA-binding domain. Lock formation is highly specific and exceeds reported in vivo efficiencies. We postulate that protein-protein interactions may actually hinder, rather than promote, proper lock formation.
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