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Effects of Distal Pocket Mutations on the Geminate Recombination of NO with Leghemoglobin on the Picosecond Time Scale
Author(s) -
Pramit K. Chowdhury,
Suman Kundu,
Mintu Halder,
K. Das,
Mark S. Hargrove,
Jacob W. Petrich
Publication year - 2003
Publication title -
the journal of physical chemistry b
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.864
H-Index - 392
eISSN - 1520-6106
pISSN - 1520-5207
DOI - 10.1021/jp030106r
Subject(s) - leghemoglobin , myoglobin , chemistry , kinetics , mutant , biophysics , ligand (biochemistry) , heme , wild type , biochemistry , biology , enzyme , receptor , nitrogen fixation , root nodule , physics , organic chemistry , quantum mechanics , nitrogen , gene
The picosecond NO geminate rebinding kinetics of wild-type leghemoglobin, a monomeric plant hemoglobin with structural similarity to myoglobin, and six mutant proteins at the distal histidine (H61G, H61A, H61V, H61L, H61R, H61F) are investigated. All of the mutant proteins yield rebinding kinetics that are initially more rapid than that of the wild-type protein. At long times, the rebinding of H61F becomes slower than that of wild-type leghemoglobin. The H61V, H61L, and H61G mutant proteins give extraordinarily rapid and complete geminate rebinding. On a 40 ps time scale, distal effects are overwhelmingly evident for all of the mutants considered. That binding is both rapid and, in several cases, essentially single-exponential is suggestive of the nature of the barrier induced by the distal modification:  it must be such that the ligand is prohibited from reorienting with respect to, and diffusing sufficiently far from, the heme iron so that a distribution of return paths is not offered to it. Over the pa...

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