Quantifying Computational Effort Required for Stochastic Averages
Author(s) -
Andrew J. Schultz,
David A. Kofke
Publication year - 2014
Publication title -
journal of chemical theory and computation
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.001
H-Index - 185
eISSN - 1549-9626
pISSN - 1549-9618
DOI - 10.1021/ct500792x
Subject(s) - computer science , metric (unit) , context (archaeology) , focus (optics) , measure (data warehouse) , scale (ratio) , implementation , mathematical optimization , stochastic modelling , data mining , algorithm , mathematics , statistics , software engineering , paleontology , operations management , physics , quantum mechanics , optics , economics , biology
We propose a measure that quantifies the effort needed to compute a given stochastic average, considered in the context of molecular modeling. This "difficulty index" is defined in terms of CPU time, observed uncertainty, and a characteristic scale for the quantity being computed. This metric provides a focus for optimization and comparison of methods and, if applied broadly, could aid understanding of the impact of models, algorithms, implementations, and platforms on performance of molecular modeling techniques.
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