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Sampling Enhancement and Free Energy Prediction by the Flying Gaussian Method
Author(s) -
Zoran Šućur,
Vojtěch Spiwok
Publication year - 2016
Publication title -
journal of chemical theory and computation
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.001
H-Index - 185
eISSN - 1549-9626
pISSN - 1549-9618
DOI - 10.1021/acs.jctc.6b00551
Subject(s) - gaussian , sampling (signal processing) , computer science , energy (signal processing) , sampling bias , degrees of freedom (physics and chemistry) , umbrella sampling , statistical physics , statistics , gaussian process , algorithm , molecular dynamics , mathematics , physics , sample size determination , chemistry , computational chemistry , telecommunications , quantum mechanics , detector
We present a novel sampling enhancement and free energy prediction technique based on parallel simulation of the studied system with a shared bias potential. This history-independent bias potential is defined using selected degrees of freedom (collective variables). Each parallel walker of the system bears a single Gaussian shaped bias potential centered in current values of collective variables. Sampling enhancement is achieved by concentration of multiple walkers in certain free energy minimum. The method was successfully demonstrated on selected molecular systems, and presumed advantages over methods based on a history-dependent bias potential are discussed.

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