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GUI Implementation of VCDtools, A Program to Analyze Computed Vibrational Circular Dichroism Spectra
Author(s) -
Mark A. J. Koenis,
O. Visser,
Lucas Visscher,
Wybren Jan Buma,
Valentin Paul Nicu
Publication year - 2019
Publication title -
journal of chemical information and modeling
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.24
H-Index - 160
eISSN - 1549-960X
pISSN - 1549-9596
DOI - 10.1021/acs.jcim.9b00956
Subject(s) - vibrational circular dichroism , toolbox , graphical user interface , computer science , spectral line , computation , dipole , software , visualization , amplitude , magnetic dipole , computational science , physics , computational physics , algorithm , optics , quantum mechanics , artificial intelligence , programming language
As computing power increases, vibrational circular dichroism (VCD) calculations on molecules of larger sizes and complexities become possible. At the same time, the spectra resulting from these computations become increasingly more cumbersome to analyze. Here, we describe the GUI implementation into the Amsterdam Density Functional (ADF) software package of VCDtools, a toolbox that provides a user-friendly means to analyze VCD spectra. Key features are the use of the generalized coupled oscillator analysis methods, as well as an easy visualization of the atomic electric and magnetic transition dipole moments which together provide detailed insight in the origin of the VCD intensity. Using several prototypical examples we demonstrate the functionalities of the program. In particular, we show how the spectra can be analyzed to detect differences between theory and experiment arising from large-amplitude motions or incorrect molecular structures and, most importantly, how the program can be used to prevent incorrect enantiomeric assignments.

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