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Epitranscriptomic 5-Methylcytosine Profile in PM2.5-Induced Mouse Pulmonary Fibrosis
Author(s) -
Xiao Han,
Hanchen Liu,
Zezhong Zhang,
Wenlan Yang,
Chunyan Wu,
Xueying Liu,
Fang Zhang,
Baofa Sun,
Yongliang Zhao,
Guibin Jiang,
YunGui Yang,
Wenjun Ding
Publication year - 2020
Publication title -
genomics proteomics and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.114
H-Index - 49
eISSN - 2210-3244
pISSN - 1672-0229
DOI - 10.1016/j.gpb.2019.11.005
Subject(s) - pulmonary fibrosis , fibrosis , epigenetics , lung , pathogenesis , biology , downregulation and upregulation , immune system , pathology , immunology , gene , medicine , cancer research , genetics
Exposure of airborne particulate matter (PM) with an aerodynamic diameter less than 2.5 μm (PM 2.5 ) is epidemiologically associated with lung dysfunction and respiratory symptoms, including pulmonary fibrosis. However, whether epigenetic mechanisms are involved in PM 2.5 -induced pulmonary fibrosis is currently poorly understood. Herein, using a PM 2.5 -induced pulmonary fibrosis mouse model, we found that PM 2.5 exposure leads to aberrant mRNA 5-methylcytosine (m 5 C) gain and loss in fibrotic lung tissues. Moreover, we showed the m 5 C-mediated regulatory map of gene functions in pulmonary fibrosis after PM 2.5 exposure. Several genes act as m 5 C gain-upregulated factors, probably critical for the development of PM 2.5 -induced fibrosis in mouse lungs. These genes, including Lcn2, Mmp9, Chi3l1, Adipoq, Atp5j2, Atp5l, Atpif1, Ndufb6, Fgr, Slc11a1, and Tyrobp, are highly related to oxidative stress response, inflammatory responses, and immune system processes. Our study illustrates the first epitranscriptomic RNA m 5 C profile in PM 2.5 -induced pulmonary fibrosis and will be valuable in identifying biomarkers for PM 2.5 exposure-related lung pathogenesis with translational potential.

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