PMG: Multi-core Metabolite Identification | Zendy

Mohammad Mahdi Jaghoori | Zendy; Sung-Shik T. Q. Jongmans | Zendy; Frank de Boer | Zendy; Julio E. Peironcely | Zendy; JeanLoup Faulon | Zendy; Theo Reijmers | Zendy; Thomas Hankemeier | Zendy

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PMG: Multi-core Metabolite Identification

Author(s) -

Mohammad Mahdi Jaghoori,

Sung-Shik T. Q. Jongmans,

Frank de Boer,

Julio E. Peironcely,

JeanLoup Faulon,

Theo Reijmers,

Thomas Hankemeier

Publication year - 2013

Publication title -

electronic notes in theoretical computer science

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.242

H-Index - 60

ISSN - 1571-0661

DOI - 10.1016/j.entcs.2013.11.005

Subject(s) - bottleneck , scalability , computer science , pipeline (software) , identification (biology) , many core , multi core processor , distributed computing , metabolomics , parallel computing , software , core (optical fiber) , computer architecture , embedded system , bioinformatics , operating system , biology , telecommunications , botany

Distributed computing has been considered for decades as a promising way of speeding up software execution, resulting in a valuable collection of safe and efficient concurrent algorithms. With the pervasion of multi-core processors, parallelization has moved to the center of attention with new challenges, especially regarding scalability to tens or even hundreds of parallel cores. In this paper, we present a scalable multi-core tool for the metabolomics community. This tool addresses the problem of metabolite identification which is currently a bottleneck in metabolomics pipeline

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