How many hydrogen-bonded α-turns are possible?
Author(s) -
Anette Schreiber,
Peter Schramm,
Hans–Jörg Hofmann
Publication year - 2010
Publication title -
journal of molecular modeling
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.363
H-Index - 69
eISSN - 1610-2940
pISSN - 0948-5023
DOI - 10.1007/s00894-010-0830-5
Subject(s) - hydrogen bond , chemistry , hydrogen , amino acid , crystallography , ab initio , turn (biochemistry) , low barrier hydrogen bond , glycine , bond length , alanine , computational chemistry , stereochemistry , molecule , crystal structure , biochemistry , organic chemistry
The formation of α-turns is a possibility to reverse the direction of peptide sequences via five amino acids. In this paper, a systematic conformational analysis was performed to find the possible isolated α-turns with a hydrogen bond between the first and fifth amino acid employing the methods of ab initio MO theory in vacuum (HF/6-31G*, B3LYP/6-311 + G*) and in solution (CPCM/HF/6-31G*). Only few α-turn structures with glycine and alanine backbones fulfill the geometry criteria for the i←(i + 4) hydrogen bond satisfactorily. The most stable representatives agree with structures found in the Protein Data Bank. There is a general tendency to form additional hydrogen bonds for smaller pseudocycles corresponding to β- and γ-turns with better hydrogen bond geometries. Sometimes, this competition weakens or even destroys the i←(i + 4) hydrogen bond leading to very stable double β-turn structures. This is also the reason why an "ideal" α-turn with three central amino acids having the perfect backbone angle values of an α-helix could not be localized. There are numerous hints for stable α-turns with a distance between the C(α)-atoms of the first and fifth amino acid smaller than 6-7 Å, but without an i←(i + 4) hydrogen bond.
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