Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan | Zendy

Hideki Kondō | Zendy; Shogo Takemoto | Zendy; Kazuyuki Maruyama | Zendy; Sotaro Chiba | Zendy; Ida Bagus Andika | Zendy; Nobuhiro Suzuki | Zendy

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Cymbidium chlorotic mosaic virus, a new sobemovirus isolated from a spring orchid (Cymbidium goeringii) in Japan

Author(s) -

Hideki Kondō,

Shogo Takemoto,

Kazuyuki Maruyama,

Sotaro Chiba,

Ida Bagus Andika,

Nobuhiro Suzuki

Publication year - 2015

Publication title -

archives of virology

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.943

H-Index - 110

eISSN - 1432-8798

pISSN - 0304-8608

DOI - 10.1007/s00705-015-2460-9

Subject(s) - biology , cymbidium , virology , phylogenetic tree , genome , genomic organization , orfs , virus , nucleic acid sequence , whole genome sequencing , genetics , botany , open reading frame , gene , peptide sequence

Cymbidium chlorotic mosaic virus (CyCMV), isolated from a spring orchid (Cymbidium goeringii), was characterized molecularly. CyCMV isometric virions comprise a single, positive-strand RNA genome of 4,083 nucleotides and 30-kDa coat protein. The virus genome contains five overlapping open reading frames with a genomic organization similar to that of sobemoviruses. BLAST searches and phylogenetic analysis revealed that CyCMV is most closely related to papaya lethal yellowing virus, a proposed dicot-infecting sobemovirus (58.8 % nucleotide sequence identity), but has a relatively distant relationship to monocot-infecting sobemoviruses, with only modest sequence identities. This suggests that CyCMV is a new monocot-infecting member of the floating genus Sobemovirus.

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