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Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum
Author(s) -
Abdul Aziz Eida,
Salim Bougouffa,
Intikhab Álam,
Maged M. Saad,
Heribert Hirt
Publication year - 2020
Publication title -
archives of microbiology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.648
H-Index - 102
eISSN - 1432-072X
pISSN - 0302-8933
DOI - 10.1007/s00203-020-01859-2
Subject(s) - panicum , biology , tussock , perennial plant , botany
Cellulosimicrobium sp. JZ28, a root endophytic bacterium from the desert plant Panicum turgidum, was previously identified as a plant growth-promoting bacterium. The genome of JZ28 consists of a 4378,193 bp circular chromosome and contains 3930 CDSs with an average GC content of 74.5%. Whole-genome sequencing analysis revealed that JZ28 was closely related to C. aquatile 3 bp. The genome harbors genes responsible for protection against oxidative, osmotic and salinity stresses, such as the production of osmoprotectants. It also contains genes with a role in the production of volatiles, such as hydrogen sulfide, which promote biotic and abiotic stress tolerance in plants. The presence of three copies of chitinase genes indicates a possible role of JZ28 as biocontrol agent against fungal pathogens, while a number of genes for the degradation of plant biopolymers indicates potential application in industrial processes. Genome sequencing and mining of culture-dependent collections of bacterial endophytes from desert plants provide new opportunities for biotechnological applications.

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