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A Continuously Benchmarked and Crowdsourced Challenge for Rapid Development and Evaluation of Models to Predict COVID-19 Diagnosis and Hospitalization
Author(s) -
Yao Yan,
Thomas Schaffter,
Timothy Bergquist,
Thomas Yu,
Justin Prosser,
Zafer Aydın,
Amhar Jabeer,
Ivan Brugere,
Jifan Gao,
Guanhua Chen,
Jason Causey,
Yuxin Yao,
Kevin Bryson,
Dustin R. Long,
Jeffrey G. Jarvik,
Christoph I. Lee,
Adam Wilcox,
Justin Guinney,
Sean D. Mooney,
Chethan Jujjavarapu,
Jason Thomas,
Martin L. Gunn,
Yifan Wu,
Nicholas J Dobbins,
Vikas N. O’Reilly-Shah,
Andrew K. Teng,
Noah Hammarlund,
Graham Nichol,
Pascal Brandt,
Vikas Pejaver,
B.D. Britt,
Yuanfang Guan,
Lingrui Cai,
Kaiman Zeng,
B. L. Cragin,
Shirya Kaul,
Jennifer Fowler,
Öznur Taştan,
Vladimir Kovačević,
Ege Alpay,
Luiza Romanovskii-Chernik,
Aleksandr Romanovskii-Chernik,
Alper Bingol,
Sema Yılmazer,
Shankai Yan,
Santina Lin,
E.N. Arikan,
Lav R. Varshney,
Jimmy Phuong
Publication year - 2021
Publication title -
jama network open
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 3.278
H-Index - 39
ISSN - 2574-3805
DOI - 10.1001/jamanetworkopen.2021.24946
Subject(s) - covid-19 , computer science , medicine , virology , data science , pathology , outbreak , infectious disease (medical specialty) , disease
Key Points Question What can be learned from a crowdsourced challenge for the prediction of COVID-19 diagnosis and hospitalization? Findings This diagnostic and prognostic study used a model-to-data approach to implement a continuous benchmarking challenge that has enabled 482 participants to join in the effort to use regularly updated COVID-19 patient data to build machine learning models for COVID-19 diagnosis and hospitalization prediction. Machine learning models showed high accuracy in COVID-19 outcome prediction, but analysis of subgroups and prospective data revealed limitations and bias in the models. Meaning This study suggests that crowdsourced clinical algorithms can predict COVID-19 diagnosis and hospitalization, but evaluation of the submitted models using reserved data sets is necessary to avoid self-assessment traps.

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