Open AccessThree novel genetic variants in NRF2 signaling pathway genes are associated with pancreatic cancer risk
Author(s) -
Yang Wenjun,
Liu Hongliang,
Duan Bensong,
Xu Xinyuan,
Carmody Dennis,
Luo Sheng,
Walsh Kyle M.,
Abbruzzese James L.,
Zhang Xuefeng,
Chen Xiaoxin,
Wei Qingyi
Publication year - 2019
Publication title -
cancer science
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.035
H-Index - 141
eISSN - 1349-7006
pISSN - 1347-9032
DOI - 10.1111/cas.14017
Subject(s) - expression quantitative trait loci , snp , biology , single nucleotide polymorphism , genetics , genome wide association study , gene , pancreatic cancer , quantitative trait locus , genetic association , genotype , penetrance , allele , carcinogenesis , cancer , phenotype
Pancreatic cancer (PanC) is one of the most lethal solid malignancies, and metastatic PanC is often present at the time of diagnosis. Although several high‐ and low‐penetrance genes have been implicated in PanC, their roles in carcinogenesis remain only partially elucidated. Because the nuclear factor erythroid2‐related factor2 (NRF2) signaling pathway is involved in human cancers, we hypothesize that genetic variants in NRF2 pathway genes are associated with PanC risk. To test this hypothesis, we assessed associations between 31 583 common single nucleotide polymorphisms (SNP) in 164 NRF2‐related genes and PanC risk using three published genome‐wide association study (GWAS) datasets, which included 8474 cases and 6944 controls of European descent. We also carried out expression quantitative trait loci (eQTL) analysis to assess the genotype‐phenotype correlation of the identified significant SNP using publicly available data in the 1000 Genomes Project. We found that three novel SNP (ie, rs3124761, rs17458086 and rs1630747) were significantly associated with PanC risk ( P = 5.17 × 10 −7 , 5.61 × 10 −4 and 5.52 × 10 −4 , respectively). Combined analysis using the number of unfavorable genotypes (NUG) of these three SNP suggested that carriers of two to three NUG had an increased risk of PanC ( P < 0.0001), compared with those carrying zero to one NUG. Furthermore, eQTL analysis showed that both rs3124761 T and rs17458086 C alleles were associated with increased mRNA expression levels of SLC2A6 and SLC2A13 , respectively ( P < 0.05). In conclusion, genetic variants in NRF2 pathway genes could play a role in susceptibility to PanC, and further functional exploration of the underlying molecular mechanisms is warranted.