Open Accessfastsimcoal2: demographic inference under complex evolutionary scenarios
Author(s) -
Laurent Excofffier,
Nina Marchi,
David Alexander Marques,
Remi MattheyDoret,
Alexandre Gouy,
Vítor C. Sousa
Publication year - 2021
Publication title -
bioinformatics
Language(s) - Uncategorized
Resource type - Journals
SCImago Journal Rank - 3.599
H-Index - 390
eISSN - 1367-4811
pISSN - 1367-4803
DOI - 10.1093/bioinformatics/btab468
Subject(s) - coalescent theory , computer science , inference , scripting language , software , documentation , population , visualization , data mining , programming language , artificial intelligence , biology , phylogenetic tree , biochemistry , demography , sociology , gene
fastsimcoal2 extends fastsimcoal, a continuous time coalescent-based genetic simulation program, by enabling the estimation of demographic parameters under very complex scenarios from the site frequency spectrum under a maximum-likelihood framework.