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Banana production centers in Indonesia are still being invaded by panama disease.  Fusarium oxysporum  f. sp.  cubense  ( Foc ), the causal agents of that disease is reported as genetically varied. Twelve  Cryphonectria parasistica  vic primer sets were evaluated and used for  Foc  community structure analyses of  Foc  population in Java and Sumatra. The results showed that 5 loci ( vicia ,  vic2 ,  vic3a ,  vic6 , and vic7) with 9 (A, B, C, D, E, I, J, K and L) alleles were detected in 38  Foc  samples using nine  C. parasitica  vic primer sets. Two out of nine vic primer sets presumably detected  vic  loci ( vic1a  and  vic3a ). These loci were suspected to relate to the mechanism of apoptosis in  Foc  somatogamy. Based on loci diversity and allelic interaction systems, 18 haplotypes (1-18) in  Foc  population from Java and Sumatra were recognized. Haplotype diversity in Sumatra was higher than Java, while alleles relatively spread uniformly. Haplotype-7 and E allele were dominant and were found in Java and Sumatra. Meanwhile, Haplotype-18 and C alleles were specific to Java. Distribution of the dominant haplotype indicated that the island is not a geographic barrier. Three ( vic3a ,  vic6 , and  vic7 ) out of nine loci were polymorphic.

Community structure ofFusarium oxysporumf. sp.cubensein Java and Sumatra based onCryphonectria parasiticavic primer