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Bio image analysis has recently become one keystone of biological researchbut biologists tend to get lost in a plethora of available software and the wayto adjust available tools to their own image analysis problem. We present BIII,BioImage Informatic Index (www.biii.eu), the result of the first largecommunity effort to bridge the communities of algorithm and softwaredevelopers, bioimage analysts and biologists, under the form of a web-basedknowledge database crowdsourced by these communities. Software tools (> 1300),image databases for benchmarking (>20) and training materials (>70) for bioimage analysis are referenced and curated following standards constructed bythe community and then reaching a broader audience. Software tools areorganized as full protocol of analysis (workflow), specific brick (component)to construct a workflow, or software platform or library (collection). They aredescribed using Edam Bio Imaging, which is iteratively defined using thiswebsite. All entries are exposed following FAIR principles and accessible forother usage.

Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community