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We present a tutorial on setting-up the oxDNA coarse-grained model forsimulations of DNA and RNA nanotechnology. The model is a popular tool usedboth by theorists and experimentalists to simulate nucleic acid systems both inbiology and nanotechnology settings. The tutorial is aimed at new users asking"Where should I start if I want to use oxDNA". We assume no prior background inusing the model. This tutorial shows basic examples that can get a novice userstarted with the model, and points the prospective user towards additionalreading and online resources depending on which aspect of the model they areinterested in pursuing.

Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial