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This is the user manual for the hybrid code XTANT-3, simulating intensefemtosecond X-ray irradiation of matter. The code combines a few models intoone with feedbacks: transport Monte Carlo simulation, Boltzmann collisionintegrals, and tight binding molecular dynamics. Such a combination allows thesimulation of nonequilibrium, nonadiabatic, and nonthermal effects inelectronically excited matter, and the synergy and interplay of these effects.This text contains a description of the theoretical basis of the model and thepractical user manual. The detailed description should allow new users,students, and non-specialists to access the ideas behind the code and make thelearning curve less steep.

XTANT-3: X-ray-induced Thermal And Nonthermal Transitions in matter: theory, numerical details, user manual