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CellProfiler is a widely used software for creating reproducible, reusableimage analysis workflows without needing to code. In addition to the >90modules that make up the main CellProfiler program, CellProfiler has a pluginssystem that allows for the creation of new modules which integrate with otherPython tools or tools that are packaged in software containers. TheCellProfiler-plugins repository contains a number of these CellProfilermodules, especially modules that are experimental and/or dependency-heavy.Here, we present an upgraded CellProfiler-plugins repository, an example ofaccessing containerized tools, improved documentation, and addedcitation/reference tools to facilitate the use and contribution of thecommunity.

CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools