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In this article we are describing a new algorithm for detecting andvalidating partial horizontal gene transfers (HGT). The presented algorithm isbased on a sliding window procedure which analyzes fragments of the givenmultiple sequence alignment. A bootstrap procedure incorporated in our methodcan be used to estimate the support of each inferred partial HGT. The newalgorithm can be also applied to confirm or discard complete (i.e.,traditional) horizontal gene transfers detected by any HGT inferring algorithm.While working on a full-genome scale, the introduced algorithm can be used toassess the level of mosaicism of the whole species genomes as well as the ratesof complete and partial HGT underlying the evolution of the considered set ofspecies.

Un nouvel algorithme pour la detection des transferts horizontaux de  genes partiels entre les especes et pour la classification des transferts  inferes