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Motivation: The pan-genome can be stored as elastic-degenerate (ED) string, arecently introduced compact representation of multiple overlapping sequences.However, a search over the ED string does not indicate which individuals (ifany) match the entire query.  Results: We augment the ED string with sources (individuals' indexes) andpropose an extension of the SOPanG (Shift-Or for Pan-Genome) tool to reportonly true positive matches, omitting those not occurring in any of thehaplotypes. The additional stage for checking the matches yields a penalty ofless than 3.5% relative speed in practice, which means that SOPanG 2 is able toreport pattern matches in a pan-genome, mapping them onto individuals, at thesingle-thread throughput of above 430 MB/s on real data.  Availability and implementation: SOPanG 2 can be downloaded here:github.com/MrAlexSee/sopang

SOPanG 2: online searching over a pan-genome without false positives