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Assessing the correctness of genome assemblies is an important step in anygenome project. Several methods exist, but most are computationally intensiveand, in some cases, inappropriate. Here I present baa.pl, a fast andeasy-to-use program that uses transcript data to evaluate genomic assemblies.Through simulations using human chromosome 22, I show that baa.pl excels atdetecting levels of missing sequence and contiguity. The program is freelyavailable at: https://github.com/josephryan/baa.pl

Baa.pl: A tool to evaluate de novo genome assemblies with RNA transcripts