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Here we present mendelFix, a Perl script for checking Mendelian errors ingenome-wide SNP data of trio designs. The program takes 12-recoded PLINK PEDand MAP files as input to calculate a series of summary statistics forMendelian errors, sets missing offspring genotypes that present Mendelianinconsistencies, and implements a simplistic procedure to infer missinggenotypes using parent information. The program can be easily incorporated inany pipeline for family-based SNP data analysis, and is distributed as freesoftware under the GNU General Public License.

mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs