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Y haplogroup analyses are an important component of genealogicalreconstruction, population genetic analyses, medical genetics and forensics.These fields are increasingly moving towards use of low-coverage, highthroughput sequencing. However, there is as yet no software available for usingsequence data to assign Y haplogroup groups probabilistically, such that theposterior probability of assignment fully reflects the information present inthe data, and borrows information across all samples sequenced from apopulation. YHap addresses this problem.

YHap: software for probabilistic assignment of Y haplogroups from population re-sequencing data