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BADREX uses dynamically generated regular expressions to annotate termdefinition-term abbreviation pairs, and corefers unpaired acronyms andabbreviations back to their initial definition in the text. Against theMedstract corpus BADREX achieves precision and recall of 98% and 97%, andagainst a much larger corpus, 90% and 85%, respectively. BADREX yields improvedperformance over previous approaches, requires no training data and allowsruntime customisation of its input parameters. BADREX is freely available fromhttps://github.com/philgooch/BADREX-Biomedical-Abbreviation-Expander as aplugin for the General Architecture for Text Engineering (GATE) framework andis licensed under the GPLv3.

BADREX: In situ expansion and coreference of biomedical abbreviations using dynamic regular expressions