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Born in the field of medicine for the analysis of mammalian cell DNA, flow cytometry (FCM) was first used in microbiology studies in the late 1970s thanks to optical improvements and the development of new fluorochromes (Steen & Lindmo, 1979; Steen, 1986). Its initial applications in clinical microbiology are dated to the 1980s (Steen & Boyne, 1981; Ingram et al., 1982; Martinez et al., 1982; Steen 1982; Mansour et al., 1985), and, by the end of that decade, FCM had also become popular in environmental microbiology (Burkill, 1987; Burkill et al., 1990; Yentsch et al., 1983; Yentsch & Pomponi, 1986; Yentsch & Horan, 1989; Phinney & Cucci, 1989). Today, it is a poweful and commonly used tool for the study of aquatic micro-organisms. FCM has thus become a precise alternative to microscopic counts, increasing the number of both the micro-organisms detected and the samples that can be analyzed. The advantages of FCM include single-cell detection, rapid analysis (5000 cells per second or more), the generation of multiple parameters, a high degree of accuracy and statistically relevant data sets.

What Flow Cytometry can Tell Us About Marine Micro-Organisms – Current Status and Future Applications