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The chapter describes the development of methods for the analysis of Paracoccus denitrificans proteome with major focus on web-accessible 2-D PAGE dataset of P.denitrificans proteome. The most important findings revealed by P.denitrificans proteomics research are also discussed from biological point of view.

2D-PAGE Database for Studies on Energetic Metabolism of the Denitrifying Bacterium Paracoccus denitrificans