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We present a Compression Tool, "GenBit Compress", for genetic sequences basedon our new proposed "GenBit Compress Algorithm". Our Tool achieves the bestcompression ratios for Entire Genome (DNA sequences) . Significantly bettercompression results show that GenBit compress algorithm is the best among theremaining Genome compression algorithms for non-repetitive DNA sequences inGenomes. The standard Compression algorithms such as gzip or compress cannotcompress DNA sequences but only expand them in size. In this paper we considerthe problem of DNA compression. It is well known that one of the main featuresof DNA Sequences is that they contain substrings which are duplicated exceptfor a few random Mutations. For this reason most DNA compressors work bysearching and encoding approximate repeats. We depart from this strategy bysearching and encoding only exact repeats. our proposed algorithm achieves thebest compression ratio for DNA sequences for larger genome. As long as 8 lakhcharacters can be given as input While achieving the best compression ratiosfor DNA sequences, our new GenBit Compress program significantly improves therunning time of all previous DNA compressors. Assigning binary bits forfragments of DNA sequence is also a unique concept introduced in this programfor the first time in DNA compression.

international journal of computer science and information technology/international journal of computer science and information technology  (chennai. print)

Genbit Compress Tool(GBC): A Java-Based Tool to Compress DNA Sequences and Compute Compression Ratio(bits/base) of Genomes