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Recently, the Symbiodiniaceae family (previously genus Symbiodinium) has been reevaluated because of its high level of diversity, which is higher than previously thought (LaJeunesse et al., 2018). In addition, the application of hypervariable non-coding plastid minicircle region sequences of the chloroplast psbA gene (psbAncr) as a DNA marker has improved the resolution of delineating lineages to a finer level besides using the more conservative internal transcribed spacer region 2 (ITS2) of nuclear ribosomal DNA (Moore et al., 2003; LaJeunesse & Thornhill, 2011). Many studies have shown that psbAncr can discern different lineages of Symbiodiniaceae, even when differences were not detected between ITS2 sequences, and in some cases, the physical distance between specimens may be as little as 200 m (Noda et al., 2017; Reimer et al., 2017a; Wee et al., 2019). Hence, ecological studies of the host-Symbiodiniaceae (henceforth known as holobiont) relationship are now possible at finer genetic and geographic scales than previously possible.

The Diversity of Symbiodiniaceae Hosted by Palythoa tuberculosa found at the Edge of the South China Sea