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The Missouri River in South Dakota was dammed in the 1950s and 1960s, altering the biotic and abiotic factors that potentially affect native species in the mainstem reservoirs. Little research has been conducted regarding what factors regulate age-0 catch per unit effort (CPUE) of native fish species since the damming occurred. Thus, we examined age-0 CPUE for 13 native fish species in the four Missouri River mainstem reservoirs. We analyzed data from 1995 to 2015 in Lake Oahe, 2002 to 2016 in Lake Sharpe, 1998 to 2008 in Lake Francis Case, and 2000 to 2013 in Lewis and Clark Lake. Not all species were sampled in all reservoirs. We evaluated potential environmental (inflow, gauge height, peak flow, precipitation, air temperature) and biological (CPUE of other native species, nonnative species, and predators) factors that have documented impacts on age-0 native fish. Significant relationships existed between age-0 native fish CPUE and both biotic and abiotic factors in all four reservoirs, but were species- and reservoir-dependent. Age-0 CPUE was either stable or increasing in all species examined in all reservoirs except age-0 Emerald Shiner Notropis atherinoides in Lewis and Clark Lake. Age-0 Emerald Shiner CPUE in Lewis and Clark Lake was most supported by biological models (e.g., total age-0 nonnative and adult White Bass Morone chrysops CPUE), and a positive relationship existed between age-0 Emerald Shiner and both factors. We believe our findings provide valuable insight into successful management of native fish populations.

Factors Related to Age-0 Native Fish Catch per Unit Effort in the South Dakota Missouri River Reservoirs