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The cyprinid genus    Onychostoma    Günther, 1896 consists of 24 valid species distributed in Southeast Asia, including Taiwan, Hainan, mainland China and the Indochina region. In the present study, we determined the complete mitochondrial genome of    O.   lepturum   , which is 16,598 bp in length, containing 13 protein-coding genes, two  rRNA  genes, 22 tRNA genes and a typical control region (D-loop). To verify the molecular phylogeny of the subfamily  Acrossocheilinae , we provide new insights to better understand the taxonomic status of    Acrossocheilus   ,    Onychostoma    and    Folifer   brevifilis   . The phylogenetic trees presented three major clades based on the 13 protein-coding genes from 28  Acrossocheilinae  species. Clades I and II represent the    Onychostoma    and    Acrossocheilus    groups, respectively. Species of    Acrossocheilus   ,    Onychostoma    and    F.   brevifilis    are included in Clade III, which is considered as an ancestral group. This work provides genomic variation information and improves our understanding of the  Acrossocheilinae  mitogenome, which will be most valuable in providing new insights for phylogenetic analysis and population genetics research.

zookeys

Complete mitochondrial genome of the freshwater fish    Onychostoma   lepturum    (  Teleostei  ,   Cyprinidae  ): genome characterization and phylogenetic analysis