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During a routine scan for    Signal Recognition Particle   (SRP)  RNAs in eukaryotic sequences, we surprisingly found in silico evidence in GenBank for a 265-base long  SRP  RNA sequence in the  ITS1  region of a total of 11 fully identified species in three ectomycorrhizal genera of the   Basidiomycota   (  Fungi  ):    Astraeus   ,    Russula   , and    Lactarius   . To rule out sequence artifacts, one specimen from a species indicated to have the  SRP  RNA-containing  ITS  region in each of these genera was ordered and re-sequenced. Sequences identical to the corresponding GenBank entries were recovered, or in the case of a non-original but conspecific specimen differed by three bases, showing that these species indeed have an  SRP  RNA sequence incorporated into their  ITS1  region. Other than the ribosomal genes, this is the first known case of non-coding RNAs in the eukaryotic  ITS  region, and it may assist in the examination of other types of insertions in fungal genomes.

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Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (  Agaricomycetes  ,   Basidiomycota  )