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We performed conventional and molecular cytogenetic studies on the    Favites   pentagona    Esper, 1795, a scleractinian coral mostly found along the west coast of Japan. Karyotype analysis of    F.   pentagona    by G-banding revealed a karyogram containing a homogenously staining region ( HSR ) on chromosome 10 in more than 50% of the examined metaphase spreads. This  HSR  consisted of sequences from 18S ribosomal RNA ( rRNA ) genes, as demonstrated by fluorescence in situ hybridization ( FISH ) and DNA sequencing. We highlighted the development of four chromosomal  FISH  markers from repetitive genes such as U2 small nuclear RNA linked to 5S  rRNA  sequence (U2 snRNA-5S), 18S  rRNA , histone H3, and uncharacterized gene FP-9X. The chromosomal locations of the U2 snRNA-5S and 18S RNA were on the terminal end of long arm of chromosomes 2 and 10, respectively, while the histone H3 and the uncharacterized gene were located near the centromeres of chromosomes 1 and 9, respectively. These  FISH  markers will improve the karyotyping of    F.   pentagona    from mitotic preparations which helps in widening our understanding of coral genetic structure and chromosome organization. In addition, these improvements in karyotyping will provide the basis in constructing of chromosome-level genome assembly for    F.   pentagona   .

comparative cytogenetics

﻿Karyotypic analysis and isolation of four DNA markers of the scleractinian coral    Favites   pentagona    (Esper, 1795) (  Scleractinia  ,   Anthozoa  ,   Cnidaria  )

﻿Karyotypic analysis and isolation of four DNA markers of the scleractinian coral Favites pentagona (Esper, 1795) ( Scleractinia , Anthozoa , Cnidaria )

Karyotypic analysis and isolation of four DNA markers of the scleractinian coral Favites pentagona (Esper, 1795) ( Scleractinia , Anthozoa , Cnidaria )