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We evaluated a transcriptome using high-throughput Illumina HiSeq sequencing and related it to the morphology, leaf anatomy, and physiological parameters of Carpinus putoensis putoensis under NO 2 stress. The molecular mechanism of the C. putoensis NO 2 stress response was evaluated using sequencing data. NO 2 stress adversely affected the morphology, leaf anatomy, and total peroxidase (POD) activity. Through RNA-seq analysis, we used NCBI to compare the transcripts with nine databases and obtained their functional annotations. We annotated up to 2255 million clean Illumina paired-end RNA-seq reads, and 250,200 unigene sequences were assembled based on the resulting transcriptome data. More than 89% of the C. putoensis transcripts were functionally annotated. Under NO 2 stress, 1119 genes were upregulated and 1240 were downregulated. According to the KEGG pathway and GO analyses, photosynthesis, chloroplasts, plastids, and the stimulus response are related to NO 2 stress. Additionally, NO 2 stress changed the expression of POD families, and the HPL2 , HPL1 , and POD genes exhibited high expression. The transcriptome analysis of C. putoensis leaves under NO 2 stress supplies a reference for studying the molecular mechanism of C. putoensis resistance to NO 2 stress. The given transcriptome data represent a valuable resource for studies on plant genes, which will contribute towards genome annotations during future genome projects.

Comprehensive Transcriptome Analysis of Rare Carpinus putoensis Plants under NO2 stress