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The specific protein composition of stroke-causing emboli is unknown. Because ischemic stroke has a varied etiology, it is possible that the composition of the thrombus from which an embolus originated will have distinctive molecular characteristics reflective of the underlying pathophysiology. We used mass spectrometry to evaluate the protein composition of retrieved emboli from patients with differing stroke etiologies and correlated the protein levels to serum predictors of atherosclerosis.    Methods  Emboli from 20 consecutive acute stroke patients were retrieved by thrombectomy during routine stroke care. Thrombus proteins were extracted, digested, and multidimensional fractionation of peptides was performed. Fractionated peptides underwent nano-liquid chromatography with tandem mass spectrometry. Spectra were searched using Mascot software in which results with  p  < 0.05 (95% confidence interval) were considered significant and indicating identity. The results were correlated to A 1 C, low-density lipoprotein (LDL), and erythrocyte sedimentation rate (ESR) taken on admission.    Results  Eleven patients had atrial fibrillation, four had significant proximal vessel atherosclerosis, two were cryptogenic, and three had other identified stroke risk factors (left ventricular thrombus, dissection, endocarditis). Eighty-one common proteins (e.g., hemoglobin, fibrin, actin) were found in all 20 emboli. Serum LDL levels correlated with Septin-2 ( r  s  = 0.78,  p  = 0.028), Phosphoglycerate Kinase 1 ( r  s  = 0.75,  p  = 0.036), Integrin Alpha-M ( r  s  = 0.68,  p  = 0.033) and Glucose-6-phosphate dehydrogenase ( r  s  = 0.63,  p  = 0.05). Septin-7 levels inversely correlated to ESR ( r  s  = −0.84,  p  = 0.01). No significant protein correlations to A 1 C or tPA use were found.    Conclusion  Our exploratory study presents mass spectrometry analysis of thrombi retrieved from acute stroke patients and correlates the thrombus proteome to clinical features of the patient. Notably, we found proteins associated with inflammation (e.g., Integrin Alpha-M) in emboli from patients with high LDL. Although these findings are tempered by a small sample size, we provide preliminary support for the feasibility of utilizing proteomic analysis of emboli to discover proteins that may be used as markers for stroke etiology.

Peptide Composition of Stroke Causing Emboli Correlate with Serum Markers of Atherosclerosis and Inflammation