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A number of species in  Bipolaris  are important plant pathogens. Due to a limited number of synapomorphic characters, it is difficult to perform species identification and to estimate phylogeny of  Bipolaris  based solely on morphology. In this study, we sequenced the complete mitochondrial genome of  Bipolaris sorokiniana , and presented the detailed annotation of the genome. The  B. sorokiniana  mitochondrial genome is 137,775 bp long, and contains two ribosomal RNA genes, 12 core protein-coding genes, 38 tRNA genes. In addition, two ribosomal protein genes ( rps3  gene and  rps5  gene) and the fungal mitochondrial RNase P gene ( rnpB ) are identified. The large genome size is mostly determined by the presence of numerous intronic and intergenic regions. A total of 28 introns are inserted in eight core protein-coding genes. Together with the published mitochondrial genome sequences, we conducted a preliminary phylogenetic inference of Dothideomycetes under various datasets and substitution models. The monophyly of  Capnodiales ,  Botryosphaeriales  and  Pleosporales  are consistently supported in all analyses. The  Venturiaceae  forms an independent lineage, with a distant phylogenetic relationship to  Pleosporales . At the family level, the  Mycosphaerellaceae ,  Botryosphaeriaceae .  Phaeosphaeriaceae , and  Pleosporaceae  are recognized in the majority of trees.

frontiers in microbiology

The Mitochondrial Genome of the Phytopathogenic Fungus Bipolaris sorokiniana and the Utility of Mitochondrial Genome to Infer Phylogeny of Dothideomycetes