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Staphylococcus argenteus  ( S. argenteus ) is a newly identified  Staphylococcus  species that has been misidentified as  Staphylococcus aureus  ( S. aureus ) and is clinically relevant. We identified 25  S. argenteus  genomes in our collection of whole genome sequenced  S. aureus . These genomes were compared to publicly available genomes and a phylogeny revealed seven clusters corresponding to seven clonal complexes. The genome of  S. argenteus  was found to be different from the genome of  S. aureus  and a core genome analysis showed that ~33% of the total gene pool was shared between the two species, at 90% homology level. An assessment of mobile elements shows flow of SCC mec  cassettes, plasmids, phages, and pathogenicity islands, between  S. argenteus  and  S. aureus . This dataset emphasizes that  S. argenteus  and  S. aureus  are two separate species that share genetic material.

Whole Genome Sequencing of Danish Staphylococcus argenteus Reveals a Genetically Diverse Collection with Clear Separation from Staphylococcus aureus