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The diazotrophic, bacterial endophyte  Herbaspirillum frisingense  GSF30 T  has been identified in biomass grasses grown in temperate climate, including the highly nitrogen-efficient grass  Miscanthus . Its genome was annotated and compared with related  Herbaspirillum  species from diverse habitats, including  H. seropedicae , and further well-characterized endophytes. The analysis revealed that  Herbaspirillum frisingense  lacks a type III secretion system that is present in some related  Herbaspirillum  grass endophytes. Together with the lack of components of the type II secretion system, the genomic inventory indicates distinct interaction scenarios of endophytic  Herbaspirillum  strains with plants. Differences in respiration, carbon, nitrogen and cell wall metabolism among  Herbaspirillum  isolates partially correlate with their different habitats.  Herbaspirillum frisingense  is closely related to strains isolated from the rhizosphere of  phragmites  and from well water, but these lack nitrogen fixation and metabolism genes. Within grass endophytes, the high diversity in their genomic inventory suggests that even individual plant species provide distinct, highly diverse metabolic niches for successful endophyte-plant associations.

The genome of the endophytic bacterium H. frisingense GSF30T identifies diverse strategies in the Herbaspirillum genus to interact with plants