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cDNA clones covering full-length of cucumber mosaic virus Y strain (CMV-Y) RNA1 were synthesized and the complete nucleotide sequence of the RNA was determined. It consisted of 3,361 nucleotides and contained a long single open reading frame of 2,979 nucleotides. The putative •gnucleotide binding site•h and the other regions conserved in proteins involved in nucleic acid replication were found in the protein encoded by the RNA. There was almost complete sequence homology between CMV-Y and CMV-Fny RNA1s (96.4% sequence homology at the nucleotide level) and lower degree of homology between CMV-Y and CMV-Q RNA1s (76.1% sequence homology at the nucleotide level). The 5•Œ terminal sequence of CMV-Y RNA1 showed substantial homology with that of CMV-Y RNA2, but virtually no homology with that of CMV-Y RNA3. By contrast, the 3•Œ terminal sequences were highly conserved among all genome RNAs of CMV-Y and other CMV strains, Fny, O and D, and the variations were mainly found in one stem and loop structure. (Received January 5, 1990)

Complete nucleotide sequence of RNA1 of cucumber mosaic virus Y strain and evolutionary relationships among genome RNAs of the virus strains.