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A total of 100 Campylobacter coli isolates from swine reared in conventional and antimi- crobial free (ABF) farms were genotyped using multilocus sequence typing (MLST) and pulsed field gel electrophoresis (PFGE) to evaluate their discriminatory power, throughput and index of association to determine the genotypic similarity and clonal structure of the isolates. MLST had a higher discriminatory power of 0.936 than 0.889 for PFGE and higher throughput. Isolates were clustered into 26 groups by MLST compared to 11 by PFGE. Out of the 65 sequence types (ST) observed in the whole population, 50 STs here have reported for the first time. Majority of the STs were found specific to either the farm (n=38) or the slaughter (n=22). We observed ST-1413 associated only with isolates from the ABF system exhibiting the CIP ERY NAL TET resistance pattern. The high genetic diversity and the weak clonal structure of the C. coli population among swine as observed by using these two methods was further highlighted by the index of associa- tion (IA value) of 0.293.

Comparative genotyping of Campylobacter coli using multilocus sequence typing and pulsed field gel electrophoresis