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Vasanth, Achyuthan, "MetViz: an online visualization tool for regulons, genes and gene ontology" (2012). Graduate Theses and Dissertations. Paper 12496. The figure displays a snapshot of a showcase demo (Genetics example) available at the Cytoscape Web website. The diamonds could be thought of as representing genes or regulons and the lines connecting them could be thought of as relationships that exist between them. Although, the number of diamonds is relatively small, we could see the high number of crisscrossing lines in the image. This makes it difficult to identify interesting relationships that might exist in the data. The figure displays a snapshot of the visual representation of the GO hierarchy when viewed using g:Profiler's g:GOSt component. It shows the hierarchy the way windows explorer displays a folder's contents. Figure 2.3 Snapshot of the tool21 The figure displays a snapshot of MetViz. You could see the top, bottom and right panes. The top pane represents regulons as solid circles arranged in concentric rings. The bottom pane represents Gene Ontology terms in the form of rectangles visualized as a modified version of an icicle graph. The v right pane contains many expandable tabs to different functionalities that could be performed using the tool. The figure displays the top pane of the tool. The circles represent regulons and they are arranged in different concentric rings based on their degree. One of the regulons, with regulon ID 135, has been selected (highlighted in dark brown). We could see the regulons that are connected to it displayed in light brown. Lines connecting the selected regulon with the related regulons are also visible. The figure displays the bottom pane of the tool. The different rectangles represent the Gene Ontology terms. None of the Gene Ontology terms have been selected. We could see that the GO Term – GO: 00 has been zoomed into. The figure displays the list of all web safe colors. The image has been obtained from Wikipedia. The figure displays images obtained by using the ImageJ software tool with the Vischeck plugin. The tool was given a single normal image and different vi versions of the same were obtained by running simulations for Deuteranope, Protanope and Tritanope. The resulting images were evaluated for contrast. The colors seen in the Normal Image portion of the figure are the ones that were chosen to be used for the tool as they were able to produce …