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53 Introduction 54 Materials and Methods 58 PCR Amplification of Promoters from Brachypodium distachyon Genomic DNA 58 Modification of pIPKb001 Cereal Transformation Vector for Optimal Expression of GUSPLUS Reporter Gene 59 Transformation of Promoter Characterization Vectors into Brachypodium distachyon via Agrobacterium tumefaciens Transformation 60 Seed Sterilization and Plant Growth 60 Tissue Collection for X-Gluc Staining 60 X-Gluc Staining for Detection of GUS Expression 62 Rescue of Bdpmt and Bdcesa8 Mutant Phenotypes 63 Results 65 Selection of Promoter Candidates 65 iii BdPMT Promoter:GUSPLUS Transgenic Lines 67 BdPMT Promoter:GUSPLUS Expression in Stems 68 BdPMT Promoter:GUSPLUS Expression in Leaves 69 BdPMT Promoter:GUSPLUS Expression in Roots 69 BdPMT Promoter:GUSPLUS Expression in Floral Organs 70 BdCESA7 and BdCESA8 Promoter:GUSPLUS Transgenic Lines 70 BdCESA7 and BdCESA8:GUSPLUS Expression in Stems 71 BdCESA7 and BdCESA8:GUSPLUS Expression in Leaves 72 BdCESA7 and BdCESA8:GUSPLUS Expression in Roots 72 BdCESA7 and BdCESA8 :GUSPLUS Expression in Floral Organs 73 Bdpmt Phenotypic Rescue 73 Bdcesa8 Phenotypic Rescue 74 Discussion 76 References 81 Tables 86 Figures 93 Supplemental Figures 103

Analysis Of Plant Lignin Formation And Engineering For Biofuels Production