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Recombinant sequences of the SARS-CoV-2 Omicron variant were detected in surveillance samples collected in north-western Finland in January 2022. We detected 191 samples with an identical genome arrangement in weeks 3 to 11, indicating sustained community transmission. The recombinant lineage has a 5’-end of BA.1, a recombination breakpoint between  orf1a  and  orf1b  (nucleotide position 13,296–15,240) and a 3’-end of BA.2 including the  S  gene. We describe the available genomic and epidemiological data about this currently circulating recombinant XJ lineage.

Genomic and epidemiological report of the recombinant XJ lineage SARS-CoV-2 variant, detected in northern Finland, January 2022