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Carbapenems belong to the group of last resort antibiotics in human medicine. Therefore, the emergence of growing numbers of carbapenemase-producing bacteria in food-producing animals or the environment is worrying and an important concern for the public health sector. In the present study, a set of 45 Enterobacteriaceae isolated from German retail seafood (clams and shrimps), sampled in 2016, were investigated by real-time PCR for the presence of carbapenemase-producing bacteria. One Escherichia coli (ST10), isolated from a Venus clam ( Ruditapes philippinarum ) harvested in the Mediterranean Sea (Italy), contained the carbapenemase gene bla  VIM-1 as part of the variable region of a class I integron. Whole-genome sequencing indicated that the integron was embedded in a Tn3-like transposon that also contained the fluoroquinolone resistance gene qnr S1. Additional resistance genes such as the extended-spectrum beta-lactamase bla  SHV-12 and the AmpC gene bla  ACC-1 were also present in this isolate. Except bla  ACC-1 , all resistance genes were located on an IncY plasmid. These results confirm previous observations that carbapenemase-producing bacteria have reached the food chain and are of increasing concern for public health.

VIM-1 carbapenemase-producing Escherichia coli isolated from retail seafood, Germany 2016