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This paper presents the first estimation of polymorphism of the   Bosnian-Herzegovinian-Croatian Shepherd dog Tornjak in Bosnia and   Herzegovina using 10 microsatellite loci, which are an integral part of   StockMarks® for Canine Genotyping Kit (Applied Biosystems, Foster City, CA,   USA). Ten microsatellite loci used in this study are appropriate for   assessing the genetic diversity for this breed. Measures of genetic   diversity were estimated based on allelic and genotypic calculations,   observed (HO) and expected (HE) heterozygosities, deviations from   Hardy-Weinberg equilibrium and polymorphism information content (PIC). The   lowest genetic diversity was estimated for locus PEZ20, and the highest for   PEZ6 locus. Observed and expected mean heterozygosities were 0.7261 and   0.7392, respectively. Statistically significant deviation (p<0.05) from   Hardy-Weinberg equilibrium was found for PEZ1, PEZ12, PEZ3 and PEZ6 loci.   The PIC values suggested that all markers (100%) are very informative (PIC >   0.5) in terms of their suitability for genetic diversity studies. When all   observed parameters are taken into account (observed and expected   heterozygosities, PIC, number of detective and effective alleles, number of   detected and maximum possible genotypes, major allele frequency and major   allele frequency index), we can conclude that PEZ6 locus shows the highest   genetic diversity while PEZ3 displays the lowest. However, assuming values   of observed and expected heterozygosities, as well as PIC, we consider loci   PEZ20 to be the least diverse, but this locus has more effective alleles and   more genotypes present than PEZ3. These preliminary results are the first   genetic diversity survey of the Bosnian-Herzegovinian-Croatian Shepherd dog   Tornjak in Bosnia and Herzegovina and could be useful to the dog breeders in   designing and managing breeding strategies. Summarizing the information   above, we can conclude that the population of the   Bosnian-Herzegovinian-Croatian Shepherd dog Tornjak from B&H is not affected   by substantial loss of genetic diversity. Results of our study indicate   presence of reasonably high level of genetic variability and lead to a   better understanding of this dog breed

Microsatelite diversity of Bosnian-Herzegovinian-Croatian shepherd dog Tornjak