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The purpose of the Dissolved Oxygen Total Maximum Daily LoadProject (DO TMDLProject) is to provide a comprehensive understanding ofthe sources and fate of oxygen consuming materials in the San JoaquinRiver (SJR) watershed between Channel Point and Lander Avenue (upstreamSJR). When completed, this study will provide the stakeholders anunderstanding of the baseline conditions of the basin, provide input foran allocation decision, and provide the stakeholders with a tool formeasuring the impact of any waterquality management program that may beimplemented as part of the DO TMDL process. Previous studies haveidentified algal biomass as the most significant oxygen-demandingsubstance in the DO TMDL Project study-area between of Channel Point andLander Ave onthe SJR. Other oxygen-demanding substances found in theupstream SJR include ammonia and organic carbon from sources other thanalgae. The DO TMDL Project study-area contains municipalities, dairies,wetlands, cattle ranching, irrigated agriculture, and industries thatcould potentially contribute biochemical oxygen demand (BOD) to the SJR.This study is designed to discriminate between algal BOD and othersources of BOD throughout the entire upstream SJR watershed. Algalbiomass is not a conserved substance, but grows and decays in the SJR;hence, characterization of oxygen-demanding substances in the SJR isinherently complicated and requires an integrated effort of extensivemonitoring, scientific study, and modeling. In order to achieve projectobjectives, project activities were divided into a number of Tasks withspecific goals and objectives. In this report, we present the results ofmonitoring and research conducted under Task 4 of the DO TMDL Project.The major objective of Task 4 is to collect sufficient hydrologic (flow)and water quality (WQ) data to characterize the loading of algae, otheroxygen-demanding materials, and nutrients fromindividual tributaries andsub-watersheds of the upstream SJR between Mossdale and Lander Avenue.This data is specifically being collected to provide data for the Task 6Modeling effort. Task 4 provides input and calibration data for flow andWQ modeling associated with the low DO problems in the SJR watershed,including modeling on the linkage among nutrients, algae, and low DO.Task 4 is providing a higher volume of high quality and coherent data tothe modeling team than was available in the past for the upstream SJR.The monitoring and research activities under Task 4 are integrated withthe Modeling effort (Task 6) and are not designed to be a stand aloneprogram. Although, the majority of analysis of the Task 4 data isoccurring as part of the Task 6 Modeling program, analysis of Task 4 dataindependently of the modeling effort is also an important component ofthe DO TMDL Project effort. In this report, we present the results ofmonitoring and research conducted under Task 4. The major purposes ofthis report are to 1) document activities undertaken as part of theDOTMDL Project; 2) organize electronic data for delivery to Stateagencies, stakeholders and principal investigators (cooperators) on theDO TMDL Project; 3) provide a summary analysis of the data for referenceand to assist stakeholders in planning watershed activities inresponse tothe DO TMDL requirements; and 5) provide a preliminary scientificinterpretation independently of the Task 6 Modeling effort. Due to theextensive scope of theTask 4 portion of the DO TMDL Project, the Task 4March 2007 Interim Report is divided into a numbers of chapters andassociated appendixes designed to be able to stand1-3 independently ofeach other. The purpose of this chapter is to provide an overview of Task4 data collection and to explain the structure of the overallreport

San Joaquin River Up-Stream DO TMDL Project Task 4: MonitoringStudy Interim Task Report #3