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At the present stage of development of new technologies and development of specialized software, the author-developer meets with a large number of difficulties related to the protection of intellectual property. The article considers the process of sequencing itself, as it is seen by the software developer, the difficulties arising in front of him, raises issues of planning and measures of impact of the developer on the protection of intellectual property. Special attention is paid to the processing of results and databases. It is suggested that planning can be used as a software protection tool and recommendations to future developers how to use this tool to protect their intellectual property rights.

Architectural features of planning and development of data processing soft-ware for the sequencing process