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Medical data is increasingly kept in an electronic format worldwide (Bretthauer M. 2016). This serves many purposes including more efficient storage, distribution and accessibility of patient-focussed data. As important is the ability to analyse healthcare data for to optimize resource deployment and usage. The tools for the analysis are often statistical and rely on the provision of ‘clean’ datasets before this can be done. ‘Cleaning’ a dataset is often the most difficult aspect of any data analysis and involves the provision of meaningful and well-formatted data so that the interpretation of the analysis is not subject to the doubts of the data quality.

EndoMineR for the extraction of endoscopic and associated pathology data from medical reports