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This paper presents a proposed method for annotation of scientific arguments in biological/biomedical journal articles. Semantic entities and relations are used to represent the propositional content of arguments in instances of argument schemes. We describe an experiment in which we encoded the arguments in a journal article to identify issues in this approach. Our catalogue of argument schemes and a copy of the annotated article are now publically available.

Proposed Method for Annotation of Scientific Arguments in Terms of Semantic Relations and Argument Schemes