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Our recent studies have provided direct evidence for the critical role of PACE4 in the progression of prostrate cancer, identifying this enzyme as a promising target to design novel and effective treatments [1]. Moreover, we developed a potent PACE4 inhibitor with considerable selectivity (20-fold over furin) known as the Multi-Leu (ML) peptide [2]. In order to improve its pharmacological profile, we performed structure-activity relationship (SAR) studies and determined that the incorporation of the decarboxylated arginine mimetic (4-amidinobenzylamide, Amba) at the P1 position led to a more potent and stable analog [3]. Unfortunately, this inhibitor suffered from a reduced selectivity towards PACE4. To restore its specificity profile, we used a positional-scanning approach and synthesized peptide libraries by substituting each amino acid residue in the leucine core of our inhibitor. These studies revealed that we are able to enhance the specificity profile (3-fold) and preserve the inhibitory activity as well as antiproliferative properties of our inhibitor by incorporating a leucine isomer – L-isoleucine into its structure (Maluch, et al., unpublished data). Based on these results, we decided to perform further SAR studies aiming to improve the specificity and activity of our MLAmba inhibitor. We focused on the leucine core (P8-P5) and its modification with unnatural amino acid residues possessing hydrophobic character (Figure 1). First we evaluated the impact of a single substitution (from the P8 to P5 position) on the inhibitory activity of the resulting peptides, and then we combined the most promising modifications. In this work, we present the synthesis and biological evaluation of a new series of MLAmba analogs.

Structure-Based Optimization of a Potent PACE4 Inhibitor Containing a Decarboxylated P1 Arginine Mimetic